Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-openagent) Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
Align the brain prompts, graph view, and startup defaults with the latest phase 1 flow so local runs and navigation stay consistent.
Reorganize the frontend around app-level routing and page modules so the runtime and feature screens share a clearer navigation and composition layout for future work. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
